PhyloRNA: a database of RNA secondary structures with associated phylogeny
PhyloRNA contains known RNA secondary structures associated with their phylogenetic information according to several curated taxonomies (SILVA, ENA, LTP, NCBI, GTDB) to allow the scientific community to study the relationship between RNA structures and phylogenetic ranks. In addition, structural features and abstractions of the structures are available.
| Provenience of PhyloRNA structures | |
|---|---|
| # | Source and Link |
| 4128 | RCSB Protein Data Bank |
| 33753 | Gutell Lab CRW Site |
| 1956 | CRW2: Comparative RNA Web-2 |
| 728 | tmRNA Database |
| 959 | SRP Database |
| Classes of PhyloRNA structures | |
|---|---|
| # | Class |
| 1741 | 5S rRNA |
| 1158 | 16S rRNA |
| 1679 | 23S rRNA |
| 219 | Group I Introns |
| 44 | Group II Introns |
| 34955 | tRNA |
| 6 | tRNA-Seq |
| 728 | tmRNA |
| 959 | SRP |