Open Data & Software

RNA2Fun follows Open Science and FAIR principles. All software, datasets, and supporting materials are publicly available.

Software Repositories

All software developed within the RNA2Fun project is released as open source and publicly available.

TARNAS

Translation and abstraction of RNA secondary structure formats.

TripleMatcher

Identification and analysis of RNA triple helices from secondary and 3D structures.

SERNAlign

Alignment of RNA secondary structures with arbitrary pseudoknots.

STAlign

Proximity-based comparison of RNA and protein 3D structures.

Databases

PhyloRNA

Database of RNA secondary structures with phylogenetic annotation.
Includes RNA2Fun dataset v1.0 and upcoming v2.0.

Open Data on Zenodo

Data, Results, and Scripts for RNA Triple Helices Identification

Associated publication:
Decoding RNA Triple Helices: Identification from Sequence and Secondary Structure
Briefings in Bioinformatics – see Publications

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TARNAS – Software Documentation and Dataset

Associated publication:
TARNAS: A Software Tool for Abstracting and Translating RNA Secondary Structures
International Journal of Molecular Sciences – see Publications

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Data, Results, and Scripts for SERNA Distance

Associated publication:
Alignment of RNA Secondary Structures with Arbitrary Pseudoknots using Structural Sequences
Research Square preprint – see Publications